@article{wang2012interaction,
title = {Interaction-based feature selection and classification for high-dimensional biological data},
author = {Wang, Haitian and Lo, Shaw-Hwa and Zheng, Tian and Hu, Inchi},
journal = {Bioinformatics},
volume = {28},
number = {21},
pages = {2834--2842},
year = {2012},
publisher = {Oxford University Press}
}
@article{meier2008group,
title = {The group lasso for logistic regression},
author = {Meier, Lukas and Van De Geer, Sara and B{\"u}hlmann, Peter},
journal = {Journal of the Royal Statistical Society: Series B (Statistical Methodology)},
volume = {70},
number = {1},
pages = {53--71},
year = {2008},
publisher = {Wiley Online Library}
}
@article{tibshirani2005sparsity,
title = {Sparsity and smoothness via the fused lasso},
author = {Tibshirani, Robert and Saunders, Michael and Rosset, Saharon and Zhu, Ji and Knight, Keith},
journal = {Journal of the Royal Statistical Society: Series B (Statistical Methodology)},
volume = {67},
number = {1},
pages = {91--108},
year = {2005},
publisher = {Wiley Online Library}
}
@article{bengio2013representation,
title = {Representation learning: A review and new perspectives},
author = {Bengio, Yoshua and Courville, Aaron and Vincent, Pascal},
journal = {IEEE transactions on pattern analysis and machine intelligence},
volume = {35},
number = {8},
pages = {1798--1828},
year = {2013},
publisher = {IEEE}
}
@book{burnham2003model,
title = {Model selection and multimodel inference: a practical information-theoretic approach},
author = {Burnham, Kenneth P and Anderson, David R},
year = {2003},
publisher = {Springer Science \& Business Media}
}
@article{wan2010boost,
title = {BOOST: A fast approach to detecting gene-gene interactions in genome-wide case-control studies},
author = {Wan, Xiang and Yang, Can and Yang, Qiang and Xue, Hong and Fan, Xiaodan and Tang, Nelson LS and Yu, Weichuan},
journal = {The American Journal of Human Genetics},
volume = {87},
number = {3},
pages = {325--340},
year = {2010},
publisher = {Elsevier}
}
@article{zhang2007bayesian,
title = {Bayesian inference of epistatic interactions in case-control studies},
author = {Zhang, Yu and Liu, Jun S},
journal = {Nature genetics},
volume = {39},
number = {9},
pages = {1167},
year = {2007},
publisher = {Nature Publishing Group}
}
@article{dong2008exploration,
title = {Exploration of gene--gene interaction effects using entropy-based methods},
author = {Dong, Changzheng and Chu, Xun and Wang, Ying and Wang, Yi and Jin, Li and Shi, Tieliu and Huang, Wei and Li, Yixue},
journal = {European Journal of Human Genetics},
volume = {16},
number = {2},
pages = {229},
year = {2008},
publisher = {Nature Publishing Group}
}
@article{li2013model,
title = {A model-free approach for detecting interactions in genetic association studies},
author = {Li, Jiahan and Dan, Jun and Li, Chunlei and Wu, Rongling},
journal = {Briefings in bioinformatics},
volume = {15},
number = {6},
pages = {1057--1068},
year = {2013},
publisher = {Oxford University Press}
}
@article{zhang2010team,
title = {TEAM: efficient two-locus epistasis tests in human genome-wide association study},
author = {Zhang, Xiang and Huang, Shunping and Zou, Fei and Wang, Wei},
journal = {Bioinformatics},
volume = {26},
number = {12},
pages = {i217--i227},
year = {2010},
publisher = {Oxford University Press}
}
@article{yang2008snpharvester,
title = {SNPHarvester: a filtering-based approach for detecting epistatic interactions in genome-wide association studies},
author = {Yang, Can and He, Zengyou and Wan, Xiang and Yang, Qiang and Xue, Hong and Yu, Weichuan},
journal = {Bioinformatics},
volume = {25},
number = {4},
pages = {504--511},
year = {2008},
publisher = {Oxford University Press}
}
@book{meyn2012markov,
title = {Markov chains and stochastic stability},
author = {Meyn, Sean P and Tweedie, Richard L},
year = {2012},
publisher = {Springer Science \& Business Media}
}
@book{james2001interaction,
title = {Interaction effects in logistic regression},
author = {James Jaccard},
volume = {135},
year = {2001},
publisher = {SAGE Publications, Incorporated}
}
@book{jaccard2003interaction,
title = {Interaction effects in multiple regression},
author = {Jaccard, James and Jaccard, Jim and Turrisi, Robert},
number = {72},
year = {2003},
publisher = {Sage}
}
@article{lebarbier,
title = {{Le crit{\`e}re BIC : fondements th{\'e}oriques et interpr{\'e}tation}},
author = {Lebarbier, Emilie and Mary-Huard, Tristan},
url = {https://hal.inria.fr/inria-00070685},
type = {Research Report},
number = {RR-5315},
pages = {17},
institution = {{INRIA}},
year = {2004},
keywords = {Crit{\`è}re bay{\'e}sien ; approximation de Laplace ; consistance pour la dimension ; crit{\`e}re de s{\'e}lection de mod{\`e}les},
pdf = {https://hal.inria.fr/inria-00070685/file/RR-5315.pdf},
hal_id = {inria-00070685},
hal_version = {v1}
}
@article{park2007penalized,
title = {Penalized logistic regression for detecting gene interactions},
author = {Park, Mee Young and Hastie, Trevor},
journal = {Biostatistics},
volume = {9},
number = {1},
pages = {30--50},
year = {2007},
publisher = {Oxford University Press}
}
@article{wu2009genome,
title = {Genome-wide association analysis by lasso penalized logistic regression},
author = {Wu, Tong Tong and Chen, Yi Fang and Hastie, Trevor and Sobel, Eric and Lange, Kenneth},
journal = {Bioinformatics},
volume = {25},
number = {6},
pages = {714--721},
year = {2009},
publisher = {Oxford University Press}
}
@article{bien2013lasso,
title = {A lasso for hierarchical interactions},
author = {Bien, Jacob and Taylor, Jonathan and Tibshirani, Robert},
journal = {Annals of statistics},
volume = {41},
number = {3},
pages = {1111},
year = {2013},
publisher = {NIH Public Access}
}
@article{tibshirani1996regression,
title = {Regression shrinkage and selection via the lasso},
author = {Tibshirani, Robert},
journal = {Journal of the Royal Statistical Society. Series B (Methodological)},
pages = {267--288},
year = {1996},
publisher = {JSTOR}
}
@article{morgan2014adversity,
title = {Adversity, cannabis use and psychotic experiences: evidence of cumulative and synergistic effects},
author = {Morgan, Craig and Reininghaus, Ulrich and Reichenberg, Abraham and Frissa, Souci and Hotopf, Matthew and Hatch, Stephani L and SELCoH Study Team and others},
journal = {The British Journal of Psychiatry},
volume = {204},
number = {5},
pages = {346--353},
year = {2014},
publisher = {Cambridge University Press}
}
@article{geman1984stochastic,
title = {Stochastic relaxation, Gibbs distributions, and the Bayesian restoration of images},
author = {Geman, Stuart and Geman, Donald},
journal = {IEEE Transactions on pattern analysis and machine intelligence},
number = {6},
pages = {721--741},
year = {1984},
publisher = {IEEE}
}
@article{hastings1970monte,
title = {Monte Carlo sampling methods using Markov chains and their applications},
author = {Hastings, W Keith},
journal = {Biometrika},
volume = {57},
number = {1},
pages = {97--109},
year = {1970},
publisher = {Biometrika Trust}
}
@article{ramirez2016multivariate,
title = {Multivariate discretization based on evolutionary cut points selection for classification},
author = {Ram{\'\i}rez-Gallego, Sergio and Garc{\'\i}a, Salvador and Ben{\'\i}tez, Jos{\'e} Manuel and Herrera, Francisco},
journal = {IEEE transactions on cybernetics},
volume = {46},
number = {3},
pages = {595--608},
year = {2016},
publisher = {IEEE}
}
@article{sang2014effective,
title = {An effective discretization method for disposing high-dimensional data},
author = {Sang, Yu and Qi, Heng and Li, Keqiu and Jin, Yingwei and Yan, Deqin and Gao, Shusheng},
journal = {Information Sciences},
volume = {270},
pages = {73--91},
year = {2014},
publisher = {Elsevier}
}
@article{calcagno2010glmulti,
title = {glmulti: an R package for easy automated model selection with (generalized) linear models},
author = {Calcagno, Vincent and de Mazancours, Claire and others},
year = {2010}
}
@article{simon,
title = {A Permutation Approach to Testing Interactions for Binary Response by Comparing Correlations Between Classes},
author = {Noah Simon and Robert Tibshirani},
journal = {Journal of the American Statistical Association},
volume = {110},
number = {512},
year = {2015},
publisher = {Taylor & Francis}
}
@article{roughset,
title = {{Variable Precision Rough Set Model}},
author = {Wojciech Ziarko},
year = {1993}
}
@article{chi2,
title = {{Chi2: Feature Selection and Discretization of Numeric Attributes}},
author = {Huan Liu and Rudy Setiono},
year = {1995}
}
@article{wrapper1,
title = {{Supervised and Unsupervised Discretization of Continuous Features}},
author = {James Dougherty and Ron Kohavi and Mehran Sahami},
year = {1995}
}
@article{modzeta,
title = {{An Efficient Global Discretization Method}},
author = {K.M. Ho and P.D. Scott},
year = {1998}
}
@article{zeta,
title = {{Zeta: a Global Method for Discretization of Continuous Variables}},
author = {K.M. Ho and P.D. Scott},
year = {1997}
}
@article{conmerge,
title = {{Concurrent Discretization of Multiple Attributes}},
author = {Ke Wang and Bing Liu},
year = {1998}
}
@article{test1,
title = {{Variable precision rough set theory and data discretisation: an application to corporate failure prediction}},
author = {Malcom J. Beynon and Michael J. Peel},
year = {2001}
}
@article{modchi2,
title = {{A Modified Chi2 Algorithm for Discretization}},
author = {Francis E.H. Tay},
year = {2002}
}
@article{exchi2,
title = {{An Extended Chi2 Algorithm for Discretization of Real Value Attributes}},
author = {Chao-Ton Su and Jyh-Hwa Hsu},
year = {2005}
}
@article{HDD,
title = {{HDD: a hypercube division-based algorithm for discretisation}},
author = {Ping Yang and Ji-Sheng Li and Yong-Xuan Huang},
year = {2010}
}
@article{td4c,
title = {{Classification-Driven Temporal Discretization of Multivariate Time Series}},
author = {Robert Moskovitch and Yuval Shahar},
year = {2014}
}
@article{wrapper3,
title = {{Discretization: An Enabling Technique}},
author = {HUAN LIU and FARHAD HUSSAIN and CHEW LIM TAN and MANORANJAN DASH},
year = {2002}
}
@article{li2018robust,
title = {Robust variable and interaction selection for logistic regression and general index models},
author = {Li, Yang and Liu, Jun S},
journal = {Journal of the American Statistical Association},
pages = {1--16},
year = {2018},
publisher = {Taylor \& Francis}
}
@article{ritchie2001multifactor,
title = {Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer},
author = {Ritchie, Marylyn D and Hahn, Lance W and Roodi, Nady and Bailey, L Renee and Dupont, William D and Parl, Fritz F and Moore, Jason H},
journal = {The American Journal of Human Genetics},
volume = {69},
number = {1},
pages = {138--147},
year = {2001},
publisher = {Elsevier}
}
@article{fan2015innovated,
title = {Innovated interaction screening for high-dimensional nonlinear classification},
author = {Fan, Yingying and Kong, Yinfei and Li, Daoji and Zheng, Zemin and others},
journal = {The Annals of Statistics},
volume = {43},
number = {3},
pages = {1243--1272},
year = {2015},
publisher = {Institute of Mathematical Statistics}
}
@article{gui2013simple,
title = {A simple and computationally efficient approach to multifactor dimensionality reduction analysis of gene-gene interactions for quantitative traits},
author = {Gui, Jiang and Moore, Jason H and Williams, Scott M and Andrews, Peter and Hillege, Hans L and van der Harst, Pim and Navis, Gerjan and Van Gilst, Wiek H and Asselbergs, Folkert W and Gilbert-Diamond, Diane},
journal = {PLoS One},
volume = {8},
number = {6},
pages = {e66545},
year = {2013},
publisher = {Public Library of Science}
}
@article{lou2007generalized,
title = {A generalized combinatorial approach for detecting gene-by-gene and gene-by-environment interactions with application to nicotine dependence},
author = {Lou, Xiang-Yang and Chen, Guo-Bo and Yan, Lei and Ma, Jennie Z and Zhu, Jun and Elston, Robert C and Li, Ming D},
journal = {The American Journal of Human Genetics},
volume = {80},
number = {6},
pages = {1125--1137},
year = {2007},
publisher = {Elsevier}
}
@article{lee2012gene,
title = {Gene--gene interaction analysis for the survival phenotype based on the Cox model},
author = {Lee, Seungyeoun and Kwon, Min-Seok and Oh, Jung Mi and Park, Taesung},
journal = {Bioinformatics},
volume = {28},
number = {18},
pages = {i582--i588},
year = {2012},
publisher = {Oxford University Press}
}
@inproceedings{lee2011gene,
title = {Gene-gene interaction analysis for the survival phenotype based on the standardized residuals from parametric regression models},
author = {Lee, Seungyeoun and Oh, Jinseok and Kwon, Min-Seok and Park, Taesung},
booktitle = {Bioinformatics and Biomedicine Workshops (BIBMW), 2011 IEEE International Conference on},
pages = {725--729},
year = {2011},
organization = {IEEE}
}
@article{cattaert2010fam,
title = {FAM-MDR: a flexible family-based multifactor dimensionality reduction technique to detect epistasis using related individuals},
author = {Cattaert, Tom and Urrea, V{\'\i}ctor and Naj, Adam C and De Lobel, Lizzy and De Wit, Vanessa and Fu, Mao and John, Jestinah M Mahachie and Shen, Haiqing and Calle, M Luz and Ritchie, Marylyn D and others},
journal = {PLoS One},
volume = {5},
number = {4},
pages = {e10304},
year = {2010},
publisher = {Public Library of Science}
}
@article{lou2008combinatorial,
title = {A combinatorial approach to detecting gene-gene and gene-environment interactions in family studies},
author = {Lou, Xiang-Yang and Chen, Guo-Bo and Yan, Lei and Ma, Jennie Z and Mangold, Jamie E and Zhu, Jun and Elston, Robert C and Li, Ming D},
journal = {The American Journal of Human Genetics},
volume = {83},
number = {4},
pages = {457--467},
year = {2008},
publisher = {Elsevier}
}
@article{choi2013multivariate,
title = {Multivariate generalized multifactor dimensionality reduction to detect gene-gene interactions},
author = {Choi, Jiin and Park, Taesung},
journal = {BMC systems biology},
volume = {7},
number = {6},
pages = {S15},
year = {2013},
publisher = {BioMed Central}
}
@article{yu2015multivariate,
title = {Multivariate quantitative multifactor dimensionality reduction for detecting gene-gene interactions},
author = {Yu, Wenbao and Kwon, Min-Seok and Park, Taesung},
journal = {Human heredity},
volume = {79},
number = {3-4},
pages = {168--181},
year = {2015},
publisher = {Karger Publishers}
}
@article{chung2006odds,
title = {Odds ratio based multifactor-dimensionality reduction method for detecting gene--gene interactions},
author = {Chung, Yujin and Lee, Seung Yeoun and Elston, Robert C and Park, Taesung},
journal = {Bioinformatics},
volume = {23},
number = {1},
pages = {71--76},
year = {2006},
publisher = {Oxford University Press}
}
@article{namkung2009new,
title = {New evaluation measures for multifactor dimensionality reduction classifiers in gene--gene interaction analysis},
author = {Namkung, Junghyun and Kim, Kyunga and Yi, Sungon and Chung, Wonil and Kwon, Min-Seok and Park, Taesung},
journal = {Bioinformatics},
volume = {25},
number = {3},
pages = {338--345},
year = {2009},
publisher = {Oxford University Press}
}
@article{jung2016novel,
title = {A novel fuzzy set based multifactor dimensionality reduction method for detecting gene--gene interaction},
author = {Jung, Hye-Young and Leem, Sangseob and Lee, Sungyoung and Park, Taesung},
journal = {Computational biology and chemistry},
volume = {65},
pages = {193--202},
year = {2016},
publisher = {Elsevier}
}
@article{kooperberg2005identifying,
title = {Identifying interacting SNPs using Monte Carlo logic regression},
author = {Kooperberg, Charles and Ruczinski, Ingo},
journal = {Genetic epidemiology},
volume = {28},
number = {2},
pages = {157--170},
year = {2005},
publisher = {Wiley Online Library}
}
@article{schwender2007identification,
title = {Identification of SNP interactions using logic regression},
author = {Schwender, Holger and Ickstadt, Katja},
journal = {Biostatistics},
volume = {9},
number = {1},
pages = {187--198},
year = {2007},
publisher = {Oxford University Press}
}
@inproceedings{andritsos2003clustering,
title = {Clustering categorical data based on information loss minimization},
author = {Andritsos, Periklis and Tsaparas, Panayiotis and Miller, Ren{\'e}e J and Sevcik, Kenneth C},
year = {2003}
}
@inproceedings{ganti1999cactus,
title = {CACTUS—clustering categorical data using summaries},
author = {Ganti, Venkatesh and Gehrke, Johannes and Ramakrishnan, Raghu},
booktitle = {Proceedings of the fifth ACM SIGKDD international conference on Knowledge discovery and data mining},
pages = {73--83},
year = {1999},
organization = {ACM}
}
@article{guha2000rock,
title = {ROCK: A robust clustering algorithm for categorical attributes},
author = {Guha, Sudipto and Rastogi, Rajeev and Shim, Kyuseok},
journal = {Information systems},
volume = {25},
number = {5},
pages = {345--366},
year = {2000},
publisher = {Elsevier}
}
@article{chen2006rough,
title = {A rough set-based hierarchical clustering algorithm for categorical data},
author = {Chen, Duo and Cui, Du-Wu and Wang, Chao-Xue and Wang, Zhu-Rong},
journal = {International Journal of Information Technology},
volume = {12},
number = {3},
pages = {149--159},
year = {2006}
}
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